Boolean Biotech

Archives

2025-12-13 Using Claude Code for computational biology
2025-10-16 Boolean Biotech VHH Design Competition 2025
2025-09-28 AI antibody design in 2025
2025-05-05 AI and protein patents
2025-03-08 Protein binder design revisited
2025-02-09 A list of health-related products
2024-12-30 What we learned about binder design from the Adaptyv competition
2024-11-30 The ABCs of Alphafold 3, Boltz and Chai-1
2024-09-07 The Adaptyv binder design competition
2024-07-27 A simple evolution simulation
2024-03-31 Evaluating longevity drugs with LLMs
2024-01-14 Progress towards parsing publications with LLMs
2023-11-26 Using modal for bioinformatics
2023-09-04 A simple way to simulate protein–ligand interactions (that does not work)
2023-06-25 Colab and computational tools for drug design
2023-02-25 Using GPT-3 as a knowledge-base in biotech
2022-07-02 Computational tools for drug development
2022-01-17 The baffling COR
2021-10-30 Modern biotech data infrastructure
2021-10-03 Permutation tests are good
2021-02-15 Sequencing a human genome at home
2021-01-02 Modeling EV range with a multilevel model
2020-08-02 Numpyro probabilistic model of blood glucose
2020-07-04 Water purity analysis with a GeneQuant
2020-04-19 A month with a CGM: an analysis of blood glucose responses to food
2019-07-27 DNA sequencing at home with the flongle
2019-06-02 Comparing bioinformatics workflow systems: nextflow, snakemake, reflow
2019-03-23 Tools for working on the cloud
2019-01-20 Instagram celebrity generation using neural nets: Jake Dangerback
2018-11-11 The Sequencing Gap
2018-07-12 The amyloid hypothesis
2017-10-17 DNA alignment with Python, Nim and JavaScript
2017-09-22 Normal-looking distributions and maximum entropy
2017-09-11 Y Combinator and Biotech, 2017
2017-06-27 Drug Targets and Therapies
2017-02-06 An Automated Protein Synthesis Pipeline with Transcriptic and Snakemake
2017-01-26 Internet of Lab Things
2016-10-10 Oxford Nanopore in 2016
2016-08-14 A Toy Oxford Nanopore Simulator Using A Hierarchical Bayesian Model in PyMC3
2016-06-05 Cool Things Review
2016-04-10 Convolutional Neural Net Playing a 3D Game
2016-03-21 Engineering Proteins in the Cloud with Python and Transcriptic, or, How to Make Any Protein You Want for $360
2015-08-10 Transcriptic pUC19 PCR Amplification
2015-07-16 IPython Notebook Tips
2015-06-18 Transcriptic E. coli Transformation
2015-06-13 The Modern Virtual Biotech
2015-05-29 Arcturus BioCloud Robot Lab
2015-05-24 Natural Knockdowns: myostatin
2015-05-14 Oxford Nanopore Conference 2015
2015-05-09 Linear Regression Experiments
2015-04-19 Kruschke's Doing Bayesian Data Analysis with PyMC3 in an IPython notebook
2015-04-14 UK Biobank, NIH Data Science
2015-03-24 BIIB037: Analyzing Biogen's Alzheimer's drug data
2015-01-30 Choosing a website PaaS: AWS, Azure, Google, etc.
2015-01-25 Human genetics and drug discovery
2015-01-06 Biobanks
2015-01-05 BEST Bayesian t-test
2014-12-24 OneStart 2015
2014-11-16 Mixture of Gaussians in PyMC3
2014-11-11 Analyzing Sequencing Read Errors with PyMC3
2014-10-20 SBIR Data
2014-09-24 Naming Boolean Biotech
2014-09-22 The Africa Soil Property Prediction Challenge
2014-09-15 Using IPython with Domino
2014-09-14 Outsourcing Compute
2014-09-13 Open Data in Neuroscience
2014-09-12 iGEM Projects
2014-09-11 Open Data
2014-09-10 Research Reproducibility
2014-09-01 Outsourcing Wet-Lab Experiments
2014-08-30 GenoCAD
2014-08-16 Hybrid Protein
2014-08-13 DNA Vaccine Dosing
2014-08-13 pVAX1
2014-08-13 2014-08-13 Progress Report
2014-08-12 2014-08-12 Progress Report
2014-08-12 Protein Design
2014-08-12 Transdermal Drug Delivery
2014-08-11 2014-08-11 Progress Report
2014-08-11 Mammalian Promoter Strength
2014-08-10 2014-08-10 Progress Report
2014-08-10 iGEM
2014-08-09 Naked DNA and Hair Follicles
2014-08-09 2014-08-09 Progress Report
2014-08-08 2014-08-08 Progress Report