archives –––––––– @btnaughton

Archives

14 Jan 2024 Progress towards parsing publications with LLMs
26 Nov 2023 Using modal for bioinformatics
04 Sep 2023 A simple way to simulate protein–ligand interactions (that does not work)
25 Jun 2023 Colab and computational tools for drug design
25 Feb 2023 Using GPT-3 as a knowledge-base in biotech
02 Jul 2022 Computational tools for drug development
17 Jan 2022 The baffling COR
30 Oct 2021 Modern biotech data infrastructure
03 Oct 2021 Permutation tests are good
15 Feb 2021 Sequencing a human genome at home
02 Jan 2021 Modeling EV range with a multilevel model
02 Aug 2020 Numpyro probabilistic model of blood glucose
04 Jul 2020 Water purity analysis with a GeneQuant
19 Apr 2020 A month with a CGM: an analysis of blood glucose responses to food
27 Jul 2019 DNA sequencing at home with the flongle
02 Jun 2019 Comparing bioinformatics workflow systems: nextflow, snakemake, reflow
23 Mar 2019 Tools for working on the cloud
20 Jan 2019 Instagram celebrity generation using neural nets: Jake Dangerback
11 Nov 2018 The Sequencing Gap
12 Jul 2018 The amyloid hypothesis
17 Oct 2017 DNA alignment with Python, Nim and JavaScript
22 Sep 2017 Normal-looking distributions and maximum entropy
11 Sep 2017 Y Combinator and Biotech, 2017
27 Jun 2017 Drug Targets and Therapies
06 Feb 2017 An Automated Protein Synthesis Pipeline with Transcriptic and Snakemake
26 Jan 2017 Internet of Lab Things
10 Oct 2016 Oxford Nanopore in 2016
14 Aug 2016 A Toy Oxford Nanopore Simulator Using A Hierarchical Bayesian Model in PyMC3
05 Jun 2016 Cool Things Review
10 Apr 2016 Convolutional Neural Net Playing a 3D Game
21 Mar 2016 Engineering Proteins in the Cloud with Python and Transcriptic, or, How to Make Any Protein You Want for $360
10 Aug 2015 Transcriptic pUC19 PCR Amplification
16 Jul 2015 IPython Notebook Tips
18 Jun 2015 Transcriptic E. coli Transformation
13 Jun 2015 The Modern Virtual Biotech
29 May 2015 Arcturus BioCloud Robot Lab
24 May 2015 Natural Knockdowns: myostatin
14 May 2015 Oxford Nanopore Conference 2015
09 May 2015 Linear Regression Experiments
19 Apr 2015 Kruschke's Doing Bayesian Data Analysis with PyMC3 in an IPython notebook
14 Apr 2015 UK Biobank, NIH Data Science
24 Mar 2015 BIIB037: Analyzing Biogen's Alzheimer's drug data
30 Jan 2015 Choosing a website PaaS: AWS, Azure, Google, etc.
25 Jan 2015 Human genetics and drug discovery
06 Jan 2015 Biobanks
05 Jan 2015 BEST Bayesian t-test
24 Dec 2014 OneStart 2015
16 Nov 2014 Mixture of Gaussians in PyMC3
11 Nov 2014 Analyzing Sequencing Read Errors with PyMC3
20 Oct 2014 SBIR Data
24 Sep 2014 Naming Boolean Biotech
22 Sep 2014 The Africa Soil Property Prediction Challenge
15 Sep 2014 Using IPython with Domino
14 Sep 2014 Outsourcing Compute
13 Sep 2014 Open Data in Neuroscience
12 Sep 2014 iGEM Projects
11 Sep 2014 Open Data
10 Sep 2014 Research Reproducibility
01 Sep 2014 Outsourcing Wet-Lab Experiments
30 Aug 2014 GenoCAD
16 Aug 2014 Hybrid Protein
13 Aug 2014 DNA Vaccine Dosing
13 Aug 2014 pVAX1
13 Aug 2014 2014-08-13 Progress Report
12 Aug 2014 2014-08-12 Progress Report
12 Aug 2014 Protein Design
12 Aug 2014 Transdermal Drug Delivery
11 Aug 2014 2014-08-11 Progress Report
11 Aug 2014 Mammalian Promoter Strength
10 Aug 2014 2014-08-10 Progress Report
10 Aug 2014 iGEM
09 Aug 2014 Naked DNA and Hair Follicles
09 Aug 2014 2014-08-09 Progress Report
08 Aug 2014 2014-08-08 Progress Report

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